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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.14

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-02-03, 22:30 CET based on data in: /data/medugorac/Shared/Maulik/projects/scalePopgen/work/ca/6d4c36a65bc2c39b7bfe1555f78598

        Genetic structure

        analysis carried out to explore genetic structure of populations.

        Fst-distance based NJ tree

        Fst distances were calculated using plink and NJ distances were calculated using Biopython module

        idx: 0 dist: 0.0423 support: 0.0000 height: 0.0000 name: Angusidx: 1 dist: 0.0102 support: 0.0000 height: 0.0321 name: Red_Angusidx: 2 dist: 0.0378 support: 0.0000 height: 0.0398 name: Maine_Anjouidx: 3 dist: 0.0332 support: 0.0000 height: 0.0468 name: Holsteinidx: 4 dist: 0.0340 support: 0.0000 height: 0.0459 name: Kholmogoryidx: 5 dist: 0.0850 support: 0.0000 height: 0.0002 name: Jerseyidx: 6 dist: 0.0724 support: 0.0000 height: 0.0127 name: Herefordidx: 7 dist: 0.0158 support: 0.0000 height: 0.0754 name: Charolaisidx: 8 dist: 0.0185 support: 0.0000 height: 0.0687 name: Gelbviehidx: 9 dist: 0.0277 support: 0.0000 height: 0.0595 name: Simmentalidx: 10 dist: 0.0030 support: 0.0000 height: 0.1058 name: Kazakh_Cattleidx: 11 dist: 0.0142 support: 0.0000 height: 0.1027 name: Mongolian_Cattleidx: 12 dist: 0.0586 support: 0.0000 height: 0.0529 name: Tibetan_Yellowidx: 13 dist: 0.0869 support: 0.0000 height: 0.0247 name: Yakutidx: 14 dist: 0.0433 support: 0.0000 height: 0.0706 name: Ankoleidx: 15 dist: 0.0967 support: 0.0000 height: 0.0171 name: Wenshan_Cattleidx: 16 dist: 0.0000 support: 0.0000 height: 0.2667 name: Ndamaidx: 17 dist: 0.0353 support: 0.0000 height: 0.0423 name: Inner2idx: 18 dist: 0.0075 support: 0.0000 height: 0.0776 name: Inner9idx: 19 dist: 0.0052 support: 0.0000 height: 0.0799 name: Inner10idx: 20 dist: 0.0017 support: 0.0000 height: 0.0851 name: Inner13idx: 21 dist: 0.0017 support: 0.0000 height: 0.0851 name: Inner15idx: 22 dist: 0.0044 support: 0.0000 height: 0.0868 name: Inner14idx: 23 dist: 0.0019 support: 0.0000 height: 0.0912 name: Inner12idx: 24 dist: 0.0060 support: 0.0000 height: 0.0872 name: Inner8idx: 25 dist: 0.0157 support: 0.0000 height: 0.0931 name: Inner11idx: 26 dist: 0.0081 support: 0.0000 height: 0.1089 name: Inner7idx: 27 dist: 0.0040 support: 0.0000 height: 0.1169 name: Inner6idx: 28 dist: 0.0093 support: 0.0000 height: 0.1116 name: Inner4idx: 29 dist: 0.0326 support: 0.0000 height: 0.1209 name: Inner5idx: 30 dist: 0.0396 support: 0.0000 height: 0.1139 name: Inner1idx: 31 dist: 0.1132 support: 0.0000 height: 0.1535 name: Inner3idx: 32 dist: 0.0000 support: 0.0000 height: 0.2667 name: 32AngusRed_AngusMaine_AnjouHolsteinKholmogoryJerseyHerefordCharolaisGelbviehSimmentalKazakh_CattleMongolian_CattleTibetan_YellowYakutAnkoleWenshan_CattleNdama

        Principal Component Analysis (PCA)

        PCA was carried out using smartpca program of eigensoft package

        Bokeh Plot

        Q-matrices of ADMIXTURE analysis

        Note that the color-pattern is not consistent across the different values of K

        Bokeh Plot

        Identical by state (IBS) distance based Neighbor Joining (NJ) tree

        1-IBS distance was calculated using plink and NJ distances were calculated using Biopyton module

        idx: 0 dist: 0.0644 support: 0.0000 height: 0.0125 pop: Holstein name: SRS597739idx: 1 dist: 0.0701 support: 0.0000 height: 0.0068 pop: Holstein name: SRS597741idx: 2 dist: 0.0846 support: 0.0000 height: 0.0018 pop: Holstein name: SRS597750idx: 3 dist: 0.0833 support: 0.0000 height: 0.0132 pop: Holstein name: SRS597749idx: 4 dist: 0.0952 support: 0.0000 height: 0.0060 pop: Holstein name: SRS597742idx: 5 dist: 0.0907 support: 0.0000 height: 0.0166 pop: Holstein name: SRS597729idx: 6 dist: 0.0758 support: 0.0000 height: 0.0152 pop: Holstein name: SRS582840idx: 7 dist: 0.0778 support: 0.0000 height: 0.0133 pop: Holstein name: SRS582855idx: 8 dist: 0.0673 support: 0.0000 height: 0.0115 pop: Holstein name: SRS597736idx: 9 dist: 0.0675 support: 0.0000 height: 0.0113 pop: Holstein name: SRS597744idx: 10 dist: 0.0923 support: 0.0000 height: 0.0178 pop: Holstein name: SRS597746idx: 11 dist: 0.0905 support: 0.0000 height: 0.0110 pop: Holstein name: SRS597732idx: 12 dist: 0.0827 support: 0.0000 height: 0.0188 pop: Holstein name: SRS597735idx: 13 dist: 0.0700 support: 0.0000 height: 0.0099 pop: Holstein name: SRS597733idx: 14 dist: 0.0707 support: 0.0000 height: 0.0093 pop: Holstein name: SRS597740idx: 15 dist: 0.0860 support: 0.0000 height: 0.0101 pop: Holstein name: SRS597737idx: 16 dist: 0.0840 support: 0.0000 height: 0.0121 pop: Holstein name: SRS597743idx: 17 dist: 0.0898 support: 0.0000 height: 0.0117 pop: Holstein name: SRS597730idx: 18 dist: 0.0836 support: 0.0000 height: 0.0179 pop: Holstein name: SRS597752idx: 19 dist: 0.0895 support: 0.0000 height: 0.0182 pop: Holstein name: SRS597753idx: 20 dist: 0.1046 support: 0.0000 height: 0.0025 pop: Holstein name: SRS565647idx: 21 dist: 0.0915 support: 0.0000 height: 0.0155 pop: Holstein name: SRS597748idx: 22 dist: 0.0869 support: 0.0000 height: 0.0178 pop: Holstein name: SRS597747idx: 23 dist: 0.0892 support: 0.0000 height: 0.0155 pop: Holstein name: SRS597755idx: 24 dist: 0.1054 support: 0.0000 height: 0.0056 pop: Holstein name: SRS565646idx: 25 dist: 0.1110 support: 0.0000 height: 0.0036 pop: Holstein name: SRS565648idx: 26 dist: 0.0830 support: 0.0000 height: 0.0166 pop: Holstein name: SRS565374idx: 27 dist: 0.0863 support: 0.0000 height: 0.0132 pop: Holstein name: SRS597751idx: 28 dist: 0.0858 support: 0.0000 height: 0.0201 pop: Kholmogory name: SRS6910408idx: 29 dist: 0.0878 support: 0.0000 height: 0.0181 pop: Kholmogory name: SRS6910420idx: 30 dist: 0.0878 support: 0.0000 height: 0.0208 pop: Kholmogory name: SRS6910386idx: 31 dist: 0.0906 support: 0.0000 height: 0.0164 pop: Kholmogory name: SRS6910390idx: 32 dist: 0.0872 support: 0.0000 height: 0.0198 pop: Kholmogory name: SRS6910396idx: 33 dist: 0.0891 support: 0.0000 height: 0.0191 pop: Kholmogory name: SRS6910421idx: 34 dist: 0.0916 support: 0.0000 height: 0.0165 pop: Kholmogory name: SRS6910422idx: 35 dist: 0.0919 support: 0.0000 height: 0.0180 pop: Kholmogory name: SRS6910388idx: 36 dist: 0.0922 support: 0.0000 height: 0.0192 pop: Kholmogory name: SRS6910391idx: 37 dist: 0.0931 support: 0.0000 height: 0.0193 pop: Kholmogory name: SRS6910419idx: 38 dist: 0.0863 support: 0.0000 height: 0.0199 pop: Kholmogory name: SRS6910389idx: 39 dist: 0.0876 support: 0.0000 height: 0.0186 pop: Kholmogory name: SRS6910397idx: 40 dist: 0.0882 support: 0.0000 height: 0.0201 pop: Kholmogory name: SRS6910394idx: 41 dist: 0.0870 support: 0.0000 height: 0.0184 pop: Kholmogory name: SRS6910392idx: 42 dist: 0.0849 support: 0.0000 height: 0.0204 pop: Kholmogory name: SRS6910424idx: 43 dist: 0.0920 support: 0.0000 height: 0.0182 pop: Kholmogory name: SRS6910387idx: 44 dist: 0.0886 support: 0.0000 height: 0.0190 pop: Kholmogory name: SRS6910385idx: 45 dist: 0.0897 support: 0.0000 height: 0.0180 pop: Kholmogory name: SRS6910423idx: 46 dist: 0.0969 support: 0.0000 height: 0.0163 pop: Kholmogory name: SRS6910393idx: 47 dist: 0.0958 support: 0.0000 height: 0.0175 pop: Kholmogory name: SRS6910395idx: 48 dist: 0.0688 support: 0.0000 height: 0.0165 pop: Hereford name: SRS629095idx: 49 dist: 0.0675 support: 0.0000 height: 0.0178 pop: Hereford name: SRS629340idx: 50 dist: 0.0759 support: 0.0000 height: 0.0178 pop: Hereford name: SRS629099idx: 51 dist: 0.0780 support: 0.0000 height: 0.0156 pop: Hereford name: SRS631191idx: 52 dist: 0.0819 support: 0.0000 height: 0.0171 pop: Hereford name: SRS629339idx: 53 dist: 0.0838 support: 0.0000 height: 0.0161 pop: Hereford name: SRS629097idx: 54 dist: 0.0718 support: 0.0000 height: 0.0197 pop: Hereford name: SRS629694idx: 55 dist: 0.0753 support: 0.0000 height: 0.0162 pop: Hereford name: SRS631192idx: 56 dist: 0.0785 support: 0.0000 height: 0.0156 pop: Hereford name: SRS631194idx: 57 dist: 0.0801 support: 0.0000 height: 0.0178 pop: Hereford name: SRS631208idx: 58 dist: 0.0848 support: 0.0000 height: 0.0159 pop: Hereford name: SRS629094idx: 59 dist: 0.0966 support: 0.0000 height: 0.0068 pop: Hereford name: SRS428710idx: 60 dist: 0.0703 support: 0.0000 height: 0.0185 pop: Hereford name: SRS629092idx: 61 dist: 0.0728 support: 0.0000 height: 0.0160 pop: Hereford name: SRS631190idx: 62 dist: 0.0736 support: 0.0000 height: 0.0205 pop: Hereford name: SRS631226idx: 63 dist: 0.0930 support: 0.0000 height: 0.0050 pop: Hereford name: SRS428704idx: 64 dist: 0.0817 support: 0.0000 height: 0.0192 pop: Hereford name: SRS631198idx: 65 dist: 0.0817 support: 0.0000 height: 0.0192 pop: Hereford name: SRS631223idx: 66 dist: 0.0804 support: 0.0000 height: 0.0203 pop: Hereford name: SRS631211idx: 67 dist: 0.0823 support: 0.0000 height: 0.0185 pop: Hereford name: SRS631216idx: 68 dist: 0.0824 support: 0.0000 height: 0.0189 pop: Hereford name: SRS631213idx: 69 dist: 0.0872 support: 0.0000 height: 0.0164 pop: Hereford name: SRS628362idx: 70 dist: 0.0858 support: 0.0000 height: 0.0200 pop: Hereford name: SRS631195idx: 71 dist: 0.0761 support: 0.0000 height: 0.0259 pop: Hereford name: SRS631218idx: 72 dist: 0.0879 support: 0.0000 height: 0.0142 pop: Hereford name: SRS631225idx: 73 dist: 0.0869 support: 0.0000 height: 0.0180 pop: Hereford name: SRS631224idx: 74 dist: 0.0968 support: 0.0000 height: 0.0123 pop: Hereford name: SRS428705idx: 75 dist: 0.0643 support: 0.0000 height: 0.0133 pop: Jersey name: SRS597765idx: 76 dist: 0.0689 support: 0.0000 height: 0.0086 pop: Jersey name: SRS597766idx: 77 dist: 0.0641 support: 0.0000 height: 0.0136 pop: Jersey name: SRS597768idx: 78 dist: 0.0690 support: 0.0000 height: 0.0086 pop: Jersey name: SRS597769idx: 79 dist: 0.0633 support: 0.0000 height: 0.0070 pop: Jersey name: SRS597762idx: 80 dist: 0.0642 support: 0.0000 height: 0.0061 pop: Jersey name: SRS597767idx: 81 dist: 0.0916 support: 0.0000 height: 0.0015 pop: Jersey name: SRS597761idx: 82 dist: 0.0805 support: 0.0000 height: 0.0000 pop: Jersey name: SRS597763idx: 83 dist: 0.0669 support: 0.0000 height: 0.0135 pop: Jersey name: SRS597770idx: 84 dist: 0.0835 support: 0.0000 height: 0.0100 pop: Jersey name: SRS597764idx: 85 dist: 0.0897 support: 0.0000 height: 0.0111 pop: Jersey name: SRS597758idx: 86 dist: 0.0852 support: 0.0000 height: 0.0156 pop: Jersey name: SRS597760idx: 87 dist: 0.0996 support: 0.0000 height: 0.0038 pop: Jersey name: SRS597759idx: 88 dist: 0.0933 support: 0.0000 height: 0.0110 pop: Jersey name: SRS597756idx: 89 dist: 0.0940 support: 0.0000 height: 0.0103 pop: Jersey name: SRS597757idx: 90 dist: 0.0785 support: 0.0000 height: 0.0049 pop: Angus name: SRS597602idx: 91 dist: 0.0733 support: 0.0000 height: 0.0100 pop: Angus name: SRS597608idx: 92 dist: 0.0721 support: 0.0000 height: 0.0132 pop: Angus name: SRS597621idx: 93 dist: 0.0683 support: 0.0000 height: 0.0169 pop: Angus name: SRS597625idx: 94 dist: 0.0772 support: 0.0000 height: 0.0111 pop: Angus name: SRS597604idx: 95 dist: 0.0700 support: 0.0000 height: 0.0183 pop: Angus name: SRS597617idx: 96 dist: 0.0757 support: 0.0000 height: 0.0119 pop: Angus name: SRS597616idx: 97 dist: 0.0707 support: 0.0000 height: 0.0169 pop: Angus name: SRS597622idx: 98 dist: 0.0750 support: 0.0000 height: 0.0112 pop: Angus name: SRS597609idx: 99 dist: 0.0757 support: 0.0000 height: 0.0106 pop: Angus name: SRS597614idx: 100 dist: 0.0790 support: 0.0000 height: 0.0091 pop: Angus name: SRS597613idx: 101 dist: 0.0768 support: 0.0000 height: 0.0121 pop: Angus name: SRS597624idx: 102 dist: 0.0917 support: 0.0000 height: 0.0085 pop: Angus name: SRS597626idx: 103 dist: 0.0833 support: 0.0000 height: 0.0062 pop: Angus name: SRS597597idx: 104 dist: 0.0774 support: 0.0000 height: 0.0120 pop: Angus name: SRS597618idx: 105 dist: 0.0801 support: 0.0000 height: 0.0099 pop: Angus name: SRS597611idx: 106 dist: 0.0743 support: 0.0000 height: 0.0157 pop: Angus name: SRS597623idx: 107 dist: 0.0746 support: 0.0000 height: 0.0098 pop: Angus name: SRS597601idx: 108 dist: 0.0756 support: 0.0000 height: 0.0088 pop: Angus name: SRS597620idx: 109 dist: 0.0838 support: 0.0000 height: 0.0040 pop: Angus name: SRS597598idx: 110 dist: 0.0729 support: 0.0000 height: 0.0158 pop: Angus name: SRS597605idx: 111 dist: 0.0751 support: 0.0000 height: 0.0053 pop: Angus name: SRS597595idx: 112 dist: 0.0689 support: 0.0000 height: 0.0114 pop: Angus name: SRS597607idx: 113 dist: 0.0764 support: 0.0000 height: 0.0111 pop: Angus name: SRS597610idx: 114 dist: 0.0755 support: 0.0000 height: 0.0119 pop: Angus name: SRS614728idx: 115 dist: 0.0657 support: 0.0000 height: 0.0199 pop: Angus name: SRS597615idx: 116 dist: 0.0699 support: 0.0000 height: 0.0156 pop: Angus name: SRS597619idx: 117 dist: 0.0728 support: 0.0000 height: 0.0164 pop: Angus name: SRS597612idx: 118 dist: 0.0771 support: 0.0000 height: 0.0125 pop: Angus name: SRS597606idx: 119 dist: 0.0792 support: 0.0000 height: 0.0114 pop: Angus name: SRS597603idx: 120 dist: 0.0862 support: 0.0000 height: 0.0096 pop: Red_Angus name: SRS428708idx: 121 dist: 0.0747 support: 0.0000 height: 0.0211 pop: Red_Angus name: SRS641741idx: 122 dist: 0.0881 support: 0.0000 height: 0.0118 pop: Red_Angus name: SRS428709idx: 123 dist: 0.0866 support: 0.0000 height: 0.0189 pop: Red_Angus name: SRS629338idx: 124 dist: 0.0853 support: 0.0000 height: 0.0203 pop: Red_Angus name: SRS641737idx: 125 dist: 0.0877 support: 0.0000 height: 0.0200 pop: Red_Angus name: SRS628373idx: 126 dist: 0.0881 support: 0.0000 height: 0.0207 pop: Red_Angus name: SRS628374idx: 127 dist: 0.0881 support: 0.0000 height: 0.0219 pop: Red_Angus name: SRS641736idx: 128 dist: 0.0873 support: 0.0000 height: 0.0200 pop: Red_Angus name: SRS631187idx: 129 dist: 0.0858 support: 0.0000 height: 0.0215 pop: Red_Angus name: SRS631188idx: 130 dist: 0.0910 support: 0.0000 height: 0.0190 pop: Red_Angus name: SRS629341idx: 131 dist: 0.0868 support: 0.0000 height: 0.0232 pop: Red_Angus name: SRS631196idx: 132 dist: 0.0879 support: 0.0000 height: 0.0225 pop: Red_Angus name: SRS629672idx: 133 dist: 0.0855 support: 0.0000 height: 0.0243 pop: Maine_Anjou name: SRS629671idx: 134 dist: 0.0842 support: 0.0000 height: 0.0256 pop: Maine_Anjou name: SRS631210idx: 135 dist: 0.0877 support: 0.0000 height: 0.0239 pop: Maine_Anjou name: SRS631215idx: 136 dist: 0.0881 support: 0.0000 height: 0.0248 pop: Maine_Anjou name: SRS631212idx: 137 dist: 0.0881 support: 0.0000 height: 0.0245 pop: Maine_Anjou name: SRS629678idx: 138 dist: 0.0883 support: 0.0000 height: 0.0243 pop: Maine_Anjou name: SRS631193idx: 139 dist: 0.0888 support: 0.0000 height: 0.0244 pop: Maine_Anjou name: SRS629692idx: 140 dist: 0.0903 support: 0.0000 height: 0.0248 pop: Charolais name: SRS629686idx: 141 dist: 0.0876 support: 0.0000 height: 0.0274 pop: Charolais name: SRS631230idx: 142 dist: 0.0942 support: 0.0000 height: 0.0261 pop: Charolais name: SRS629691idx: 143 dist: 0.0961 support: 0.0000 height: 0.0247 pop: Charolais name: SRS628370idx: 144 dist: 0.0963 support: 0.0000 height: 0.0237 pop: Charolais name: SRS628372idx: 145 dist: 0.0941 support: 0.0000 height: 0.0260 pop: Charolais name: SRS629321idx: 146 dist: 0.0941 support: 0.0000 height: 0.0252 pop: Charolais name: SRS628369idx: 147 dist: 0.0955 support: 0.0000 height: 0.0238 pop: Charolais name: SRS629334idx: 148 dist: 0.0975 support: 0.0000 height: 0.0240 pop: Charolais name: SRS628371idx: 149 dist: 0.0968 support: 0.0000 height: 0.0237 pop: Charolais name: SRS628376idx: 150 dist: 0.0943 support: 0.0000 height: 0.0263 pop: Charolais name: SRS631207idx: 151 dist: 0.0976 support: 0.0000 height: 0.0235 pop: Charolais name: SRS629687idx: 152 dist: 0.0766 support: 0.0000 height: 0.0120 pop: Simmental name: SRS597774idx: 153 dist: 0.0746 support: 0.0000 height: 0.0140 pop: Simmental name: SRS597788idx: 154 dist: 0.0816 support: 0.0000 height: 0.0164 pop: Simmental name: SRS597781idx: 155 dist: 0.0978 support: 0.0000 height: 0.0109 pop: Simmental name: SRS597809idx: 156 dist: 0.0995 support: 0.0000 height: 0.0147 pop: Simmental name: SRS597782idx: 157 dist: 0.1001 support: 0.0000 height: 0.0142 pop: Simmental name: SRS597811idx: 158 dist: 0.0974 support: 0.0000 height: 0.0101 pop: Simmental name: SRS597797idx: 159 dist: 0.0933 support: 0.0000 height: 0.0143 pop: Simmental name: SRS597808idx: 160 dist: 0.1008 support: 0.0000 height: 0.0118 pop: Simmental name: SRS597776idx: 161 dist: 0.1002 support: 0.0000 height: 0.0164 pop: Simmental name: SRS597778idx: 162 dist: 0.0923 support: 0.0000 height: 0.0156 pop: Simmental name: SRS597792idx: 163 dist: 0.0936 support: 0.0000 height: 0.0143 pop: Simmental name: SRS597812idx: 164 dist: 0.0927 support: 0.0000 height: 0.0190 pop: Simmental name: SRS597775idx: 165 dist: 0.0875 support: 0.0000 height: 0.0174 pop: Simmental name: SRS597780idx: 166 dist: 0.0916 support: 0.0000 height: 0.0133 pop: Simmental name: SRS597796idx: 167 dist: 0.0857 support: 0.0000 height: 0.0170 pop: Simmental name: SRS597785idx: 168 dist: 0.0852 support: 0.0000 height: 0.0175 pop: Simmental name: SRS597798idx: 169 dist: 0.0938 support: 0.0000 height: 0.0139 pop: Simmental name: SRS597795idx: 170 dist: 0.0851 support: 0.0000 height: 0.0162 pop: Simmental name: SRS597787idx: 171 dist: 0.0886 support: 0.0000 height: 0.0127 pop: Simmental name: SRS597791idx: 172 dist: 0.0915 support: 0.0000 height: 0.0166 pop: Simmental name: SRS597773idx: 173 dist: 0.0971 support: 0.0000 height: 0.0109 pop: Simmental name: SRS597777idx: 174 dist: 0.0902 support: 0.0000 height: 0.0249 pop: Simmental name: SRS597772idx: 175 dist: 0.0972 support: 0.0000 height: 0.0206 pop: Simmental name: SRS597786idx: 176 dist: 0.1031 support: 0.0000 height: 0.0158 pop: Simmental name: SRS597813idx: 177 dist: 0.0779 support: 0.0000 height: 0.0132 pop: Simmental name: SRS597794idx: 178 dist: 0.0713 support: 0.0000 height: 0.0198 pop: Simmental name: SRS597799idx: 179 dist: 0.0854 support: 0.0000 height: 0.0126 pop: Simmental name: SRS597789idx: 180 dist: 0.0914 support: 0.0000 height: 0.0119 pop: Simmental name: SRS597771idx: 181 dist: 0.0767 support: 0.0000 height: 0.0213 pop: Gelbvieh name: SRS628363idx: 182 dist: 0.0725 support: 0.0000 height: 0.0255 pop: Gelbvieh name: SRS631197idx: 183 dist: 0.0916 support: 0.0000 height: 0.0219 pop: Gelbvieh name: SRS629683idx: 184 dist: 0.0837 support: 0.0000 height: 0.0277 pop: Gelbvieh name: SRS628367idx: 185 dist: 0.0858 support: 0.0000 height: 0.0257 pop: Gelbvieh name: SRS629693idx: 186 dist: 0.0819 support: 0.0000 height: 0.0247 pop: Gelbvieh name: SRS629100idx: 187 dist: 0.0833 support: 0.0000 height: 0.0233 pop: Gelbvieh name: SRS629679idx: 188 dist: 0.0840 support: 0.0000 height: 0.0252 pop: Gelbvieh name: SRS629673idx: 189 dist: 0.0895 support: 0.0000 height: 0.0254 pop: Gelbvieh name: SRS629326idx: 190 dist: 0.0819 support: 0.0000 height: 0.0233 pop: Gelbvieh name: SRS629675idx: 191 dist: 0.0805 support: 0.0000 height: 0.0248 pop: Gelbvieh name: SRS629681idx: 192 dist: 0.0912 support: 0.0000 height: 0.0251 pop: Gelbvieh name: SRS629674idx: 193 dist: 0.0809 support: 0.0000 height: 0.0262 pop: Gelbvieh name: SRS629676idx: 194 dist: 0.0842 support: 0.0000 height: 0.0230 pop: Gelbvieh name: SRS631221idx: 195 dist: 0.0968 support: 0.0000 height: 0.0242 pop: Gelbvieh name: SRS628366idx: 196 dist: 0.0947 support: 0.0000 height: 0.0236 pop: Gelbvieh name: SRS628364idx: 197 dist: 0.0963 support: 0.0000 height: 0.0220 pop: Gelbvieh name: SRS629669idx: 198 dist: 0.0959 support: 0.0000 height: 0.0195 pop: Gelbvieh name: SRS628368idx: 199 dist: 0.0905 support: 0.0000 height: 0.0249 pop: Gelbvieh name: SRS641742idx: 200 dist: 0.0926 support: 0.0000 height: 0.0243 pop: Gelbvieh name: SRS629682idx: 201 dist: 0.0943 support: 0.0000 height: 0.0237 pop: Gelbvieh name: SRS629325idx: 202 dist: 0.0950 support: 0.0000 height: 0.0253 pop: Gelbvieh name: SRS629684idx: 203 dist: 0.0964 support: 0.0000 height: 0.0333 pop: Kazakh_Cattle name: SRS2165153idx: 204 dist: 0.0964 support: 0.0000 height: 0.0334 pop: Kazakh_Cattle name: SRS2165154idx: 205 dist: 0.0977 support: 0.0000 height: 0.0333 pop: Kazakh_Cattle name: SRS2165155idx: 206 dist: 0.0836 support: 0.0000 height: 0.0321 pop: Kazakh_Cattle name: SRS2165147idx: 207 dist: 0.0834 support: 0.0000 height: 0.0323 pop: Kazakh_Cattle name: SRS2165149idx: 208 dist: 0.1092 support: 0.0000 height: 0.0206 pop: Kazakh_Cattle name: SRS2165150idx: 209 dist: 0.0981 support: 0.0000 height: 0.0334 pop: Kazakh_Cattle name: SRS2165148idx: 210 dist: 0.0991 support: 0.0000 height: 0.0329 pop: Kazakh_Cattle name: SRS2165151idx: 211 dist: 0.1006 support: 0.0000 height: 0.0323 pop: Kazakh_Cattle name: SRS2165152idx: 212 dist: 0.0834 support: 0.0000 height: 0.0349 pop: Mongolian_Cattle name: SRS2165157idx: 213 dist: 0.0828 support: 0.0000 height: 0.0356 pop: Mongolian_Cattle name: SRS2165160idx: 214 dist: 0.0988 support: 0.0000 height: 0.0359 pop: Mongolian_Cattle name: SRS2165156idx: 215 dist: 0.0644 support: 0.0000 height: 0.0257 pop: Yakut name: SRS6910398idx: 216 dist: 0.0600 support: 0.0000 height: 0.0300 pop: Yakut name: SRS6910406idx: 217 dist: 0.0597 support: 0.0000 height: 0.0285 pop: Yakut name: SRS6910409idx: 218 dist: 0.0617 support: 0.0000 height: 0.0265 pop: Yakut name: SRS6910412idx: 219 dist: 0.0658 support: 0.0000 height: 0.0277 pop: Yakut name: SRS6910401idx: 220 dist: 0.0636 support: 0.0000 height: 0.0300 pop: Yakut name: SRS6910411idx: 221 dist: 0.0741 support: 0.0000 height: 0.0294 pop: Yakut name: SRS6910400idx: 222 dist: 0.0774 support: 0.0000 height: 0.0313 pop: Yakut name: SRS6910399idx: 223 dist: 0.0699 support: 0.0000 height: 0.0309 pop: Yakut name: SRS6910402idx: 224 dist: 0.0754 support: 0.0000 height: 0.0255 pop: Yakut name: SRS6910417idx: 225 dist: 0.0649 support: 0.0000 height: 0.0300 pop: Yakut name: SRS6910414idx: 226 dist: 0.0649 support: 0.0000 height: 0.0300 pop: Yakut name: SRS6910415idx: 227 dist: 0.0790 support: 0.0000 height: 0.0290 pop: Yakut name: SRS6910403idx: 228 dist: 0.0775 support: 0.0000 height: 0.0313 pop: Yakut name: SRS6910407idx: 229 dist: 0.0822 support: 0.0000 height: 0.0266 pop: Yakut name: SRS6910418idx: 230 dist: 0.0827 support: 0.0000 height: 0.0299 pop: Yakut name: SRS6910405idx: 231 dist: 0.0823 support: 0.0000 height: 0.0373 pop: Yakut name: SRS6910404idx: 232 dist: 0.0845 support: 0.0000 height: 0.0403 pop: Mongolian_Cattle name: SRS2165159idx: 233 dist: 0.0831 support: 0.0000 height: 0.0417 pop: Mongolian_Cattle name: SRS2165161idx: 234 dist: 0.0916 support: 0.0000 height: 0.0418 pop: Mongolian_Cattle name: SRS2165162idx: 235 dist: 0.0962 support: 0.0000 height: 0.0385 pop: Mongolian_Cattle name: SRS2165158idx: 236 dist: 0.0724 support: 0.0000 height: 0.0354 pop: Tibetan_Yellow name: SRS2165144idx: 237 dist: 0.0715 support: 0.0000 height: 0.0363 pop: Tibetan_Yellow name: SRS2165145idx: 238 dist: 0.0735 support: 0.0000 height: 0.0384 pop: Tibetan_Yellow name: SRS2165146idx: 239 dist: 0.0732 support: 0.0000 height: 0.0393 pop: Tibetan_Yellow name: SRS2165142idx: 240 dist: 0.0820 support: 0.0000 height: 0.0374 pop: Tibetan_Yellow name: SRS2165143idx: 241 dist: 0.0845 support: 0.0000 height: 0.0387 pop: Tibetan_Yellow name: SRS2165140idx: 242 dist: 0.0780 support: 0.0000 height: 0.0406 pop: Tibetan_Yellow name: SRS2165138idx: 243 dist: 0.0809 support: 0.0000 height: 0.0377 pop: Tibetan_Yellow name: SRS2165139idx: 244 dist: 0.0647 support: 0.0000 height: 0.0557 pop: Ankole name: SRS1496254idx: 245 dist: 0.0648 support: 0.0000 height: 0.0556 pop: Ankole name: SRS1496261idx: 246 dist: 0.0747 support: 0.0000 height: 0.0577 pop: Ankole name: SRS1338704idx: 247 dist: 0.0658 support: 0.0000 height: 0.0569 pop: Ankole name: SRS1496259idx: 248 dist: 0.0658 support: 0.0000 height: 0.0569 pop: Ankole name: SRS1496264idx: 249 dist: 0.0659 support: 0.0000 height: 0.0617 pop: Ankole name: SRS1496260idx: 250 dist: 0.0727 support: 0.0000 height: 0.0578 pop: Ankole name: SRS1496265idx: 251 dist: 0.0702 support: 0.0000 height: 0.0603 pop: Ankole name: SRS1496266idx: 252 dist: 0.0770 support: 0.0000 height: 0.0561 pop: Ankole name: SRS1496262idx: 253 dist: 0.0849 support: 0.0000 height: 0.0506 pop: Ankole name: SRS1496257idx: 254 dist: 0.0603 support: 0.0000 height: 0.0486 pop: Wenshan_Cattle name: SRS2505185idx: 255 dist: 0.0625 support: 0.0000 height: 0.0464 pop: Wenshan_Cattle name: SRS2505194idx: 256 dist: 0.0628 support: 0.0000 height: 0.0472 pop: Wenshan_Cattle name: SRS2505201idx: 257 dist: 0.0644 support: 0.0000 height: 0.0477 pop: Wenshan_Cattle name: SRS2505187idx: 258 dist: 0.0646 support: 0.0000 height: 0.0488 pop: Wenshan_Cattle name: SRS2505186idx: 259 dist: 0.0660 support: 0.0000 height: 0.0488 pop: Wenshan_Cattle name: SRS2505202idx: 260 dist: 0.0689 support: 0.0000 height: 0.0532 pop: Wenshan_Cattle name: SRS2505192idx: 261 dist: 0.0616 support: 0.0000 height: 0.0835 pop: Ndama name: SRS1512417idx: 262 dist: 0.0608 support: 0.0000 height: 0.0842 pop: Ndama name: SRS1512418idx: 263 dist: 0.0624 support: 0.0000 height: 0.0841 pop: Ndama name: SRS1512407idx: 264 dist: 0.0680 support: 0.0000 height: 0.0819 pop: Ndama name: SRS1512380idx: 265 dist: 0.0687 support: 0.0000 height: 0.0812 pop: Ndama name: SRS1512406idx: 266 dist: 0.0543 support: 0.0000 height: 0.0823 pop: Ndama name: SRS1512404idx: 267 dist: 0.0523 support: 0.0000 height: 0.0844 pop: Ndama name: SRS1512405idx: 268 dist: 0.0646 support: 0.0000 height: 0.0842 pop: Ndama name: SRS1512399idx: 269 dist: 0.0095 support: 0.0000 height: 0.0769 pop: name: Inner24idx: 270 dist: 0.0100 support: 0.0000 height: 0.0864 pop: name: Inner48idx: 271 dist: 0.0129 support: 0.0000 height: 0.0853 pop: name: Inner47idx: 272 dist: 0.0045 support: 0.0000 height: 0.0936 pop: name: Inner90idx: 273 dist: 0.0047 support: 0.0000 height: 0.0964 pop: name: Inner96idx: 274 dist: 0.0008 support: 0.0000 height: 0.0982 pop: name: Inner110idx: 275 dist: 0.0027 support: 0.0000 height: 0.0915 pop: name: Inner86idx: 276 dist: 0.0053 support: 0.0000 height: 0.0888 pop: name: Inner68idx: 277 dist: 0.0061 support: 0.0000 height: 0.1012 pop: name: Inner134idx: 278 dist: 0.0175 support: 0.0000 height: 0.0911 pop: name: Inner80idx: 279 dist: 0.0297 support: 0.0000 height: 0.0788 pop: name: Inner26idx: 280 dist: 0.0009 support: 0.0000 height: 0.0990 pop: name: Inner111idx: 281 dist: 0.0037 support: 0.0000 height: 0.0942 pop: name: Inner92idx: 282 dist: 0.0039 support: 0.0000 height: 0.0941 pop: name: Inner91idx: 283 dist: 0.0026 support: 0.0000 height: 0.1072 pop: name: Inner171idx: 284 dist: 0.0013 support: 0.0000 height: 0.1085 pop: name: Inner179idx: 285 dist: 0.0016 support: 0.0000 height: 0.1014 pop: name: Inner135idx: 286 dist: 0.0231 support: 0.0000 height: 0.0800 pop: name: Inner30idx: 287 dist: 0.0006 support: 0.0000 height: 0.0998 pop: name: Inner115idx: 288 dist: 0.0025 support: 0.0000 height: 0.0979 pop: name: Inner109idx: 289 dist: 0.0039 support: 0.0000 height: 0.0979 pop: name: Inner108idx: 290 dist: 0.0009 support: 0.0000 height: 0.1009 pop: name: Inner120idx: 291 dist: 0.0006 support: 0.0000 height: 0.1008 pop: name: Inner119idx: 292 dist: 0.0018 support: 0.0000 height: 0.0863 pop: name: Inner60idx: 293 dist: 0.0034 support: 0.0000 height: 0.0844 pop: name: Inner55idx: 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Inner45idx: 308 dist: 0.0042 support: 0.0000 height: 0.0853 pop: name: Inner57idx: 309 dist: 0.0016 support: 0.0000 height: 0.0883 pop: name: Inner67idx: 310 dist: 0.0023 support: 0.0000 height: 0.0876 pop: name: Inner64idx: 311 dist: 0.0008 support: 0.0000 height: 0.0881 pop: name: Inner66idx: 312 dist: 0.0013 support: 0.0000 height: 0.0894 pop: name: Inner75idx: 313 dist: 0.0007 support: 0.0000 height: 0.0900 pop: name: Inner77idx: 314 dist: 0.0009 support: 0.0000 height: 0.0878 pop: name: Inner65idx: 315 dist: 0.0066 support: 0.0000 height: 0.0998 pop: name: Inner106idx: 316 dist: 0.0009 support: 0.0000 height: 0.1056 pop: name: Inner144idx: 317 dist: 0.0107 support: 0.0000 height: 0.0980 pop: name: Inner87idx: 318 dist: 0.0009 support: 0.0000 height: 0.1101 pop: name: Inner187idx: 319 dist: 0.0063 support: 0.0000 height: 0.1048 pop: name: Inner154idx: 320 dist: 0.0063 support: 0.0000 height: 0.1015 pop: name: Inner136idx: 321 dist: 0.0027 support: 0.0000 height: 0.1071 pop: name: Inner166idx: 322 dist: 0.0050 support: 0.0000 height: 0.1047 pop: name: Inner152idx: 323 dist: 0.0013 support: 0.0000 height: 0.1086 pop: name: Inner184idx: 324 dist: 0.0030 support: 0.0000 height: 0.1070 pop: name: Inner176idx: 325 dist: 0.0015 support: 0.0000 height: 0.1099 pop: name: Inner191idx: 326 dist: 0.0009 support: 0.0000 height: 0.1083 pop: name: Inner183idx: 327 dist: 0.0039 support: 0.0000 height: 0.1053 pop: name: Inner160idx: 328 dist: 0.0028 support: 0.0000 height: 0.1006 pop: name: Inner118idx: 329 dist: 0.0003 support: 0.0000 height: 0.1033 pop: name: Inner130idx: 330 dist: 0.0051 support: 0.0000 height: 0.0843 pop: name: Inner39idx: 331 dist: 0.0191 support: 0.0000 height: 0.0703 pop: name: Inner9idx: 332 dist: 0.0103 support: 0.0000 height: 0.0895 pop: name: Inner73idx: 333 dist: 0.0099 support: 0.0000 height: 0.0899 pop: name: Inner76idx: 334 dist: 0.0114 support: 0.0000 height: 0.0889 pop: name: Inner69idx: 335 dist: 0.0072 support: 0.0000 height: 0.0907 pop: 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pop: name: Inner188idx: 350 dist: 0.0016 support: 0.0000 height: 0.1034 pop: name: Inner131idx: 351 dist: 0.0014 support: 0.0000 height: 0.1036 pop: name: Inner132idx: 352 dist: 0.0037 support: 0.0000 height: 0.0894 pop: name: Inner56idx: 353 dist: 0.0130 support: 0.0000 height: 0.0805 pop: name: Inner28idx: 354 dist: 0.0017 support: 0.0000 height: 0.0998 pop: name: Inner105idx: 355 dist: 0.0013 support: 0.0000 height: 0.1002 pop: name: Inner107idx: 356 dist: 0.0010 support: 0.0000 height: 0.0979 pop: name: Inner98idx: 357 dist: 0.0101 support: 0.0000 height: 0.0888 pop: name: Inner71idx: 358 dist: 0.0004 support: 0.0000 height: 0.0892 pop: name: Inner72idx: 359 dist: 0.0012 support: 0.0000 height: 0.1076 pop: name: Inner155idx: 360 dist: 0.0015 support: 0.0000 height: 0.1147 pop: name: Inner215idx: 361 dist: 0.0036 support: 0.0000 height: 0.1126 pop: name: Inner209idx: 362 dist: 0.0038 support: 0.0000 height: 0.1079 pop: name: Inner148idx: 363 dist: 0.0155 support: 0.0000 height: 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rootSRS597739SRS597741SRS597750SRS597749SRS597742SRS597729SRS582840SRS582855SRS597736SRS597744SRS597746SRS597732SRS597735SRS597733SRS597740SRS597737SRS597743SRS597730SRS597752SRS597753SRS565647SRS597748SRS597747SRS597755SRS565646SRS565648SRS565374SRS597751SRS6910408SRS6910420SRS6910386SRS6910390SRS6910396SRS6910421SRS6910422SRS6910388SRS6910391SRS6910419SRS6910389SRS6910397SRS6910394SRS6910392SRS6910424SRS6910387SRS6910385SRS6910423SRS6910393SRS6910395SRS629095SRS629340SRS629099SRS631191SRS629339SRS629097SRS629694SRS631192SRS631194SRS631208SRS629094SRS428710SRS629092SRS631190SRS631226SRS428704SRS631198SRS631223SRS631211SRS631216SRS631213SRS628362SRS631195SRS631218SRS631225SRS631224SRS428705SRS597765SRS597766SRS597768SRS597769SRS597762SRS597767SRS597761SRS597763SRS597770SRS597764SRS597758SRS597760SRS597759SRS597756SRS597757SRS597602SRS597608SRS597621SRS597625SRS597604SRS597617SRS597616SRS597622SRS597609SRS597614SRS597613SRS597624SRS597626SRS597597SRS597618SRS597611SRS597623SRS597601SRS597620SRS597598SRS597605SRS597595SRS597607SRS597610SRS614728SRS597615SRS597619SRS597612SRS597606SRS597603SRS428708SRS641741SRS428709SRS629338SRS641737SRS628373SRS628374SRS641736SRS631187SRS631188SRS629341SRS631196SRS629672SRS629671SRS631210SRS631215SRS631212SRS629678SRS631193SRS629692SRS629686SRS631230SRS629691SRS628370SRS628372SRS629321SRS628369SRS629334SRS628371SRS628376SRS631207SRS629687SRS597774SRS597788SRS597781SRS597809SRS597782SRS597811SRS597797SRS597808SRS597776SRS597778SRS597792SRS597812SRS597775SRS597780SRS597796SRS597785SRS597798SRS597795SRS597787SRS597791SRS597773SRS597777SRS597772SRS597786SRS597813SRS597794SRS597799SRS597789SRS597771SRS628363SRS631197SRS629683SRS628367SRS629693SRS629100SRS629679SRS629673SRS629326SRS629675SRS629681SRS629674SRS629676SRS631221SRS628366SRS628364SRS629669SRS628368SRS641742SRS629682SRS629325SRS629684SRS2165153SRS2165154SRS2165155SRS2165147SRS2165149SRS2165150SRS2165148SRS2165151SRS2165152SRS2165157SRS2165160SRS2165156SRS6910398SRS6910406SRS6910409SRS6910412SRS6910401SRS6910411SRS6910400SRS6910399SRS6910402SRS6910417SRS6910414SRS6910415SRS6910403SRS6910407SRS6910418SRS6910405SRS6910404SRS2165159SRS2165161SRS2165162SRS2165158SRS2165144SRS2165145SRS2165146SRS2165142SRS2165143SRS2165140SRS2165138SRS2165139SRS1496254SRS1496261SRS1338704SRS1496259SRS1496264SRS1496260SRS1496265SRS1496266SRS1496262SRS1496257SRS2505185SRS2505194SRS2505201SRS2505187SRS2505186SRS2505202SRS2505192SRS1512417SRS1512418SRS1512407SRS1512380SRS1512406SRS1512404SRS1512405SRS1512399

        cross-validation (CV) plot for ADMIXTURE analysis

        Note that the color-pattern is not consistent across the different values of K

        Bokeh Plot

        summary statistics

        summary statistics of individual sample and population.

        Population-wise distribution of minor allele frequency

        Distribution of mean minor allele frequency in a user-defined window

        Sample-wise summary statistics of SNP counts

        The SNP counts are calculated using plink2

        Bokeh Plot

        Population-wise distribution of Expected heterozygosity

        Distribution of expected heterozygosity in a user-defined window

        Population-wise distribution of observed heterozygosity

        Distribution of observed heterozygosity in a user-defined window

        Treemix

        MultiQC v1.14 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.